Estimates immune and stromal cell populations using MCPcounter or mMCPcounter.
Usage
mcp_counter(exp_data, species, feature_type = "gene_name")
Arguments
- exp_data
A SummarizedExperiment object containing TPM expression data in the "tpm" assay.
- species
Character. Either "Homo sapiens" or "Mus musculus".
- feature_type
Character. Either "gene_name" or "ensembl_gene_id".
Value
A data.frame with MCPcounter scores.