This function generates a boxplot for the expression of a specified gene, grouped by a given annotation.
Usage
plot_exp_boxplot(
exp_data,
gene,
annotation,
color_var = NA,
pt_size = 1,
summary_type = c("choose", "line", "box")[1],
stat_comparisons = NA,
stat_format = NULL,
fname = NULL,
fwidth = 5,
fheight = 3
)Arguments
- exp_data
A data object containing expression data.
- gene
A character string specifying the gene for which expression is plotted.
- annotation
A character string specifying the grouping variable for the boxplot.
- color_var
Optional. A character string specifying the variable to color the points. Defaults to NA.
- pt_size
Numeric. The size of the points in the boxplot. Defaults to 1.
- summary_type
A character string specifying the type of summary to display ("choose", "line", or "box"). Defaults to "choose".
- stat_comparisons
Optional. Statistical comparisons to be displayed on the plot. Defaults to NA.
- stat_format
Optional. A format for statistical annotations. Defaults to NULL.
- fname
Optional. A character string specifying the file name to save the plot. Defaults to NULL.
- fwidth
Numeric. The width of the saved plot file. Defaults to 5.
- fheight
Numeric. The height of the saved plot file. Defaults to 3.