Creates a boxplot or crossbar summary of gene expression across sample annotations, optionally colored and annotated with statistical comparisons.
Usage
plt_boxplot(
exp_df,
gene,
annotation,
color_var,
pt_size,
summary_type,
stat_comparisons,
stat_format
)Arguments
- exp_df
A data frame, typically created by `get_exp_df()`, containing gene expression and metadata.
- gene
A character string specifying the gene name to plot on the y-axis.
- annotation
A character string specifying the annotation variable (e.g., "condition") on the x-axis.
- color_var
Optional character string specifying a variable for coloring the points. Set to `NA` to disable.
- pt_size
Numeric value for the size of the beeswarm points.
- summary_type
Character string: either `"box"` for boxplot or `"line"` for a mean crossbar.
- stat_comparisons
A list of comparison pairs for `stat_compare_means()`. Set to `NA` to use default behavior.
- stat_format
Character string for the label format used by `stat_compare_means()` (e.g., `"p.signif"`).